MALDI Mass Spectrometry Imaging

maldi_msi Scientific Instrumentation Ion
View Benchmarks (1)

Forward-Model Signal Chain

Each primitive represents a physical operation in the measurement process. Arrows show signal flow left to right.

S Sampling D Detector
Spec Notation

S → D

Benchmark Variants & Leaderboards

MALDI Mass Spectrometry Imaging

MALDI Mass Spectrometry Imaging

Full Benchmark Page →
Spec Notation

S → D

Standard Leaderboard (Top 10)

# Method Score PSNR (dB) SSIM Trust Source
🥇 CalibFormer 0.757 32.8 0.920 ✓ Certified Transformer calibration, 2024
🥈 MassSpecFormer 0.722 30.55 0.925 ✓ Certified Mass spectrometry transformer, 2024
🥉 DiffusionInstrumentation 0.722 30.54 0.925 ✓ Certified Zhang et al., 2024
4 ResNet-Calib 0.718 31.3 0.892 ✓ Certified ResNet for calibration, 2022
5 Instrument-CNN 0.699 29.61 0.911 ✓ Certified Instrument-specific CNN
6 ScoreInstrumentation 0.685 29.06 0.901 ✓ Certified Wei et al., 2025
7 PnP-NLM 0.620 26.67 0.850 ✓ Certified Non-local means filter
8 PnP-BM3D 0.605 27.6 0.790 ✓ Certified Danielyan et al., 2012
9 Peak Fitting 0.596 25.91 0.829 ✓ Certified Gaussian peak fitting
10 Calibration-Lookup 0.538 24.12 0.773 ✓ Certified Look-up table calibration

Showing top 10 of 11 methods. View all →

Mismatch Parameters (4) click to expand
Name Symbol Description Nominal Perturbed
laser_fluence_drift l_f Laser fluence drift (-) 1.0 1.04
mass_accuracy m_a Mass accuracy (ppm) 0.0 1.0
extraction_delay e_d Extraction delay (ns) 100.0 104.0
matrix_crystallization m_c Matrix crystallization (-) 1.0 1.06