Second Harmonic Generation (SHG) Microscopy
Second Harmonic Generation (SHG) Microscopy
Standard reconstruction benchmark — forward model perfectly known, no calibration needed. Score = 0.5 × clip((PSNR−15)/30, 0, 1) + 0.5 × SSIM
| # | Method | Score | PSNR (dB) | SSIM | Source | |
|---|---|---|---|---|---|---|
| 🥇 |
ScoreMicro
ScoreMicro Wei et al., ECCV 2025
38.48 dB
SSIM 0.981
Checkpoint unavailable
|
0.882 | 38.48 | 0.981 | ✓ Certified | Wei et al., ECCV 2025 |
| 🥈 |
DiffDeconv
DiffDeconv Huang et al., NeurIPS 2024
38.12 dB
SSIM 0.979
Checkpoint unavailable
|
0.875 | 38.12 | 0.979 | ✓ Certified | Huang et al., NeurIPS 2024 |
| 🥉 |
Restormer+
Restormer+ Zamir et al., ICCV 2024
37.65 dB
SSIM 0.975
Checkpoint unavailable
|
0.865 | 37.65 | 0.975 | ✓ Certified | Zamir et al., ICCV 2024 |
| 4 |
DeconvFormer
DeconvFormer Chen et al., CVPR 2024
37.25 dB
SSIM 0.972
Checkpoint unavailable
|
0.857 | 37.25 | 0.972 | ✓ Certified | Chen et al., CVPR 2024 |
| 5 |
ResUNet
ResUNet DeCelle et al., Nat. Methods 2021
35.85 dB
SSIM 0.964
Checkpoint unavailable
|
0.830 | 35.85 | 0.964 | ✓ Certified | DeCelle et al., Nat. Methods 2021 |
| 6 |
Restormer
Restormer Zamir et al., CVPR 2022
35.8 dB
SSIM 0.962
Checkpoint unavailable
|
0.828 | 35.8 | 0.962 | ✓ Certified | Zamir et al., CVPR 2022 |
| 7 |
U-Net
U-Net Ronneberger et al., MICCAI 2015
35.15 dB
SSIM 0.956
Checkpoint unavailable
|
0.814 | 35.15 | 0.956 | ✓ Certified | Ronneberger et al., MICCAI 2015 |
| 8 |
CARE
CARE Weigert et al., Nat. Methods 2018
34.5 dB
SSIM 0.948
Checkpoint unavailable
|
0.799 | 34.5 | 0.948 | ✓ Certified | Weigert et al., Nat. Methods 2018 |
| 9 | PnP-DnCNN | 0.715 | 31.2 | 0.890 | ✓ Certified | Zhang et al., IEEE TIP 2017 |
| 10 | PnP-FISTA | 0.693 | 30.42 | 0.872 | ✓ Certified | Bai et al., 2020 |
| 11 | TV-Deconvolution | 0.664 | 29.5 | 0.845 | ✓ Certified | TV-regularized deconvolution |
| 12 | Wiener Filter | 0.625 | 28.35 | 0.805 | ✓ Certified | Analytical baseline |
| 13 | Richardson-Lucy | 0.587 | 27.1 | 0.770 | ✓ Certified | Richardson 1972 / Lucy 1974 |
Dataset: PWM Benchmark (13 algorithms)
Blind Reconstruction Challenge — forward model has unknown mismatch, must calibrate from data. Score = 0.4 × PSNR_norm + 0.4 × SSIM + 0.2 × (1 − ‖y − Ĥx̂‖/‖y‖)
| # | Method | Overall Score | Public PSNR / SSIM |
Dev PSNR / SSIM |
Hidden PSNR / SSIM |
Trust | Source |
|---|---|---|---|---|---|---|---|
| 🥇 | Restormer+ + gradient | 0.787 |
0.816
34.74 dB / 0.966
|
0.784
32.89 dB / 0.952
|
0.762
32.31 dB / 0.946
|
✓ Certified | Zamir et al., ICCV 2024 |
| 🥈 | ScoreMicro + gradient | 0.764 |
0.829
36.32 dB / 0.975
|
0.753
31.3 dB / 0.935
|
0.711
29.02 dB / 0.901
|
✓ Certified | Wei et al., ECCV 2025 |
| 🥉 | DeconvFormer + gradient | 0.761 |
0.812
34.6 dB / 0.965
|
0.770
32.23 dB / 0.945
|
0.700
27.95 dB / 0.880
|
✓ Certified | Chen et al., CVPR 2024 |
| 4 | ResUNet + gradient | 0.731 |
0.795
33.27 dB / 0.955
|
0.727
29.06 dB / 0.901
|
0.670
27.46 dB / 0.869
|
✓ Certified | DeCelle et al., Nat. Methods 2021 |
| 5 | Restormer + gradient | 0.715 |
0.792
32.9 dB / 0.952
|
0.727
28.93 dB / 0.899
|
0.627
25.27 dB / 0.811
|
✓ Certified | Zamir et al., CVPR 2022 |
| 6 | DiffDeconv + gradient | 0.714 |
0.825
36.29 dB / 0.975
|
0.694
27.97 dB / 0.880
|
0.622
24.17 dB / 0.775
|
✓ Certified | Huang et al., NeurIPS 2024 |
| 7 | PnP-DnCNN + gradient | 0.702 |
0.750
29.82 dB / 0.914
|
0.693
27.51 dB / 0.870
|
0.662
26.34 dB / 0.841
|
✓ Certified | Zhang et al., IEEE TIP 2017 |
| 8 | U-Net + gradient | 0.702 |
0.785
32.69 dB / 0.950
|
0.683
27.2 dB / 0.863
|
0.637
25.36 dB / 0.813
|
✓ Certified | Ronneberger et al., MICCAI 2015 |
| 9 | CARE + gradient | 0.699 |
0.773
31.6 dB / 0.938
|
0.691
27.07 dB / 0.860
|
0.632
24.78 dB / 0.795
|
✓ Certified | Weigert et al., Nat. Methods 2018 |
| 10 | TV-Deconvolution + gradient | 0.688 |
0.718
27.85 dB / 0.878
|
0.686
27.16 dB / 0.862
|
0.659
26.12 dB / 0.835
|
✓ Certified | Rudin et al., Phys. A 1992 |
| 11 | PnP-FISTA + gradient | 0.674 |
0.738
29.23 dB / 0.904
|
0.668
26.45 dB / 0.844
|
0.617
24.32 dB / 0.780
|
✓ Certified | Bai et al., 2020 |
| 12 | Wiener Filter + gradient | 0.653 |
0.664
25.5 dB / 0.818
|
0.651
25.94 dB / 0.830
|
0.643
25.45 dB / 0.816
|
✓ Certified | Analytical baseline |
| 13 |
Richardson-Lucy + gradient
Richardson-Lucy + gradient Richardson, JOSA 1972 / Lucy, AJ 1974 Score 0.616
Correct & Reconstruct →
|
0.616 |
0.675
25.9 dB / 0.829
|
0.629
24.56 dB / 0.788
|
0.544
21.94 dB / 0.687
|
✓ Certified | Richardson, JOSA 1972 / Lucy, AJ 1974 |
Complete score requires all 3 tiers (Public + Dev + Hidden).
Join the competition →Full-access development tier with all data visible.
What you get & how to use
What you get: Measurements (y), ideal forward operator (H), spec ranges, ground truth (x_true), and true mismatch spec.
How to use: Load HDF5 → compare reconstruction vs x_true → check consistency → iterate.
What to submit: Reconstructed signals (x_hat) and corrected spec as HDF5.
Public Leaderboard
| # | Method | Score | PSNR | SSIM |
|---|---|---|---|---|
| 1 | ScoreMicro + gradient | 0.829 | 36.32 | 0.975 |
| 2 | DiffDeconv + gradient | 0.825 | 36.29 | 0.975 |
| 3 | Restormer+ + gradient | 0.816 | 34.74 | 0.966 |
| 4 | DeconvFormer + gradient | 0.812 | 34.6 | 0.965 |
| 5 | ResUNet + gradient | 0.795 | 33.27 | 0.955 |
| 6 | Restormer + gradient | 0.792 | 32.9 | 0.952 |
| 7 | U-Net + gradient | 0.785 | 32.69 | 0.95 |
| 8 | CARE + gradient | 0.773 | 31.6 | 0.938 |
| 9 | PnP-DnCNN + gradient | 0.750 | 29.82 | 0.914 |
| 10 | PnP-FISTA + gradient | 0.738 | 29.23 | 0.904 |
| 11 | TV-Deconvolution + gradient | 0.718 | 27.85 | 0.878 |
| 12 | Richardson-Lucy + gradient | 0.675 | 25.9 | 0.829 |
| 13 | Wiener Filter + gradient | 0.664 | 25.5 | 0.818 |
Spec Ranges (3 parameters)
| Parameter | Min | Max | Unit |
|---|---|---|---|
| phase_matching_error | -1.0 | 2.0 | - |
| excitation_power_fluctuation | -2.0 | 4.0 | - |
| collection_na_mismatch | -0.02 | 0.04 | - |
Blind evaluation tier — no ground truth available.
What you get & how to use
What you get: Measurements (y), ideal forward operator (H), and spec ranges only.
How to use: Apply your pipeline from the Public tier. Use consistency as self-check.
What to submit: Reconstructed signals and corrected spec. Scored server-side.
Dev Leaderboard
| # | Method | Score | PSNR | SSIM |
|---|---|---|---|---|
| 1 | Restormer+ + gradient | 0.784 | 32.89 | 0.952 |
| 2 | DeconvFormer + gradient | 0.770 | 32.23 | 0.945 |
| 3 | ScoreMicro + gradient | 0.753 | 31.3 | 0.935 |
| 4 | ResUNet + gradient | 0.727 | 29.06 | 0.901 |
| 5 | Restormer + gradient | 0.727 | 28.93 | 0.899 |
| 6 | DiffDeconv + gradient | 0.694 | 27.97 | 0.88 |
| 7 | PnP-DnCNN + gradient | 0.693 | 27.51 | 0.87 |
| 8 | CARE + gradient | 0.691 | 27.07 | 0.86 |
| 9 | TV-Deconvolution + gradient | 0.686 | 27.16 | 0.862 |
| 10 | U-Net + gradient | 0.683 | 27.2 | 0.863 |
| 11 | PnP-FISTA + gradient | 0.668 | 26.45 | 0.844 |
| 12 | Wiener Filter + gradient | 0.651 | 25.94 | 0.83 |
| 13 | Richardson-Lucy + gradient | 0.629 | 24.56 | 0.788 |
Spec Ranges (3 parameters)
| Parameter | Min | Max | Unit |
|---|---|---|---|
| phase_matching_error | -1.2 | 1.8 | - |
| excitation_power_fluctuation | -2.4 | 3.6 | - |
| collection_na_mismatch | -0.024 | 0.036 | - |
Fully blind server-side evaluation — no data download.
What you get & how to use
What you get: No data downloadable. Algorithm runs server-side on hidden measurements.
How to use: Package algorithm as Docker container / Python script. Submit via link.
What to submit: Containerized algorithm accepting y + H, outputting x_hat + corrected spec.
Hidden Leaderboard
| # | Method | Score | PSNR | SSIM |
|---|---|---|---|---|
| 1 | Restormer+ + gradient | 0.762 | 32.31 | 0.946 |
| 2 | ScoreMicro + gradient | 0.711 | 29.02 | 0.901 |
| 3 | DeconvFormer + gradient | 0.700 | 27.95 | 0.88 |
| 4 | ResUNet + gradient | 0.670 | 27.46 | 0.869 |
| 5 | PnP-DnCNN + gradient | 0.662 | 26.34 | 0.841 |
| 6 | TV-Deconvolution + gradient | 0.659 | 26.12 | 0.835 |
| 7 | Wiener Filter + gradient | 0.643 | 25.45 | 0.816 |
| 8 | U-Net + gradient | 0.637 | 25.36 | 0.813 |
| 9 | CARE + gradient | 0.632 | 24.78 | 0.795 |
| 10 | Restormer + gradient | 0.627 | 25.27 | 0.811 |
| 11 | DiffDeconv + gradient | 0.622 | 24.17 | 0.775 |
| 12 | PnP-FISTA + gradient | 0.617 | 24.32 | 0.78 |
| 13 | Richardson-Lucy + gradient | 0.544 | 21.94 | 0.687 |
Spec Ranges (3 parameters)
| Parameter | Min | Max | Unit |
|---|---|---|---|
| phase_matching_error | -0.7 | 2.3 | - |
| excitation_power_fluctuation | -1.4 | 4.6 | - |
| collection_na_mismatch | -0.014 | 0.046 | - |
Blind Reconstruction Challenge
ChallengeGiven measurements with unknown mismatch and spec ranges (not exact params), reconstruct the original signal. A method must be evaluated on all three tiers for a complete score. Scored on a composite metric: 0.4 × PSNR_norm + 0.4 × SSIM + 0.2 × (1 − ‖y − Ĥx̂‖/‖y‖).
Measurements y, ideal forward model H, spec ranges
Reconstructed signal x̂
Spec DAG — Forward Model Pipeline
M → R → D
Mismatch Parameters
| Symbol | Parameter | Description | Nominal | Perturbed |
|---|---|---|---|---|
| p_m | phase_matching_error | Phase matching error (-) | 0.0 | 1.0 |
| e_p | excitation_power_fluctuation | Excitation power fluctuation (-) | 0.0 | 2.0 |
| c_n | collection_na_mismatch | Collection NA mismatch (-) | 0.0 | 0.02 |
Credits System
Spec Primitives Reference (11 primitives)
Free-space or medium propagation kernel (Fresnel, Rayleigh-Sommerfeld).
Spatial or spatio-temporal amplitude modulation (coded aperture, SLM pattern).
Geometric projection operator (Radon transform, fan-beam, cone-beam).
Sampling in the Fourier / k-space domain (MRI, ptychography).
Shift-invariant convolution with a point-spread function (PSF).
Summation along a physical dimension (spectral, temporal, angular).
Sensor readout with gain g and noise model η (Gaussian, Poisson, mixed).
Patterned illumination (block, Hadamard, random) applied to the scene.
Spectral dispersion element (prism, grating) with shift α and aperture a.
Sample or gantry rotation (CT, electron tomography).
Spectral filter or monochromator selecting a wavelength band.